quality-filter truncates and removes sequences that don’t match a set of quality criteria. The subcommand takes a FASTA and quality score file, and writes the results to an output file:
Traceback (most recent call last):
File "../seqmagick.py", line 7, in <module>
sys.exit(cli.main(sys.argv[1:]))
File "/var/build/user_builds/seqmagick/checkouts/0.6.0/seqmagick/scripts/cli.py", line 12, in main
action, arguments = parse_arguments(argv)
File "/var/build/user_builds/seqmagick/checkouts/0.6.0/seqmagick/scripts/cli.py", line 58, in parse_arguments
for name, mod in subcommands.itermodules():
File "/var/build/user_builds/seqmagick/checkouts/0.6.0/seqmagick/subcommands/__init__.py", line 7, in itermodules
__import__('%s.%s' % (root, command), fromlist=[command]))
File "/var/build/user_builds/seqmagick/checkouts/0.6.0/seqmagick/subcommands/convert.py", line 8, in <module>
from Bio import Alphabet, SeqIO
ImportError: No module named Bio