info

seqmagick info describes one or more sequence files

Example

seqmagick info examples/*.fasta

name                      alignment  min_len  max_len  avg_len  num_seqs
examples/aligned.fasta    TRUE       9797     9797     9797.00  15
examples/dewrapped.fasta  TRUE       240      240      240.00   148
examples/range.fasta      TRUE       119      119      119.00   2
examples/test.fasta       FALSE      972      9719     1573.67  15
examples/wrapped.fasta    FALSE      120      237      178.50   2

Output can be in comma-separated, tab-separated, or aligned formats. See seqmagick info -h for details.

Usage:

Traceback (most recent call last):
  File "../seqmagick.py", line 7, in <module>
    sys.exit(cli.main(sys.argv[1:]))
  File "/var/build/user_builds/seqmagick/checkouts/0.6.0/seqmagick/scripts/cli.py", line 12, in main
    action, arguments = parse_arguments(argv)
  File "/var/build/user_builds/seqmagick/checkouts/0.6.0/seqmagick/scripts/cli.py", line 58, in parse_arguments
    for name, mod in subcommands.itermodules():
  File "/var/build/user_builds/seqmagick/checkouts/0.6.0/seqmagick/subcommands/__init__.py", line 7, in itermodules
    __import__('%s.%s' % (root, command), fromlist=[command]))
  File "/var/build/user_builds/seqmagick/checkouts/0.6.0/seqmagick/subcommands/convert.py", line 8, in <module>
    from Bio import Alphabet, SeqIO
ImportError: No module named Bio